Genotyping

Thousands of new markers across the entire genome.

GENOTYPING

Integrate genotyping information of crops from any array technology or sequencing method.
Identify sets of genomic markers that include single nucleotide polymorphisms (SNPs), insertions and deletions (InDels), copy number variations (CNVs) or structural variants (SVs).


Our key deliverable is enabling you to derive value from the results we obtain: Insightful, interpretable visualizations. To compare different varieties, we build genome graph structures and display haplotype blocks for visual separation by phenotype.

 

  • New markers: Develop thousands of new markers across the entire genome.
  • Low cost: Genotyping of polyploid species, even without a reference genome, at low cost.
  • Unbiased marker discovery: Get a complete overview of every part of the genome.
  • Tailor-made solutions: Customized set-ups for your genotyping projects for each genome, species, population size for the marker amount required.
  • Correlate traits to gene expression data: Identify traits linked to large structural variants and correlate then with gene expression data.
  • Accelerate selection: Compare hundreds of varieties, building haplotype blocks or a genome graph.

Client project: Calling variants in over 400 lines of a polyploid crop

We called variants in over 400 lines of a polyploid crop and developed suitable markers for allele-specific PCR. For any project, we continuously perform all genotyping using the same, customized parameters. This makes results comparable and reproducible.

More Information

Christoph Expert for Genotyping
Christoph Expert for Phenotyping

George

Computomics Expert on Scalable Phentotyping

Contact

Tübingen, Germany

Computomics is based in the university town of Tübingen, situated in the Southwest of Germany, but serves clients all over the world. We also have offices in Davis, California and Madison, Wisconsin.

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Computomics GmbH
Christophstr. 32
72072 Tübingen
Germany

Phone: +49 7071 568 3995
info@computomics.com