• Computomics: Data Analysis Experts

    Computomics’ data analysis experts offer custom services for next-gen sequencing projects - from crop science to metagenomics.

    animal and plant genetics

  • Computomics Services

    Computomics’ next-generation sequencing data analysis techniques can deliver unprecedented genomic insight for your research. We offer a wide range of services including:

    Why work with computomics?

    • High quality results — Each project is well documented to ensure reproducibility and accuracy.
    • Multi-platform support —We work with our clients to develop the best sequencing strategy across multiple platforms, including Illumina, ONP, and PacBio.
    • Industry-leading expertise — Between our in-house bioinformatics experts and extensive collaboration network of consultants, we can tackle tough questions across all data analysis challenges.
    • Transparent processes — No mysteries to our data analysis, we present our strategy before we start and report all methods and parameters used.
    • Data security guaranteed — Our high performance compute servers located in a secure data center combined with encryption and two-factor authentication provide highly secure and private handling of your data.
    • Fast turnaround - Tired of the wait list at your sequencing facility? We deliver great results quickly.

  • Methods

    Here, we give references to relevant methods authored by Computomics team members and collaborators.

    The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: I. sequence evaluation and plastome evolution

    Greiner S, Wang X, Rauwolf U, Silber MV, Mayer K, Meurer J, Haberer G, Herrmann RG.

    Nucleic Acids Res (2008) 36:2366-2378

    The complete nucleotide sequences of the 5 genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data

    Greiner S, Wang X, Herrmann RG, Rauwolf U, Mayer K, Haberer G, Meurer J.

    Mol Biol Evol (2008) 25:2019-2030.

    Discovery of cis-elements between sorghum and rice using co-expression and evolutionary conservation

    Wang X, Haberer G, Mayer KF.

    Bmc Genomics (2009) 10:284-284.

    The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagl M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KF, Van de Peer Y, Grigoriev IV, Nordborg M, Weigel D, Guo YL.

    Nat Genet (2011) 43:476-481.

    Reference-guided assembly of four diverse Arabidopsis thaliana genomes

    Schneeberger K, Ossowski S, Ott F, Klein JD, Wang X, Lanz C, Smith LM, Cao J, Fitz J, Warthmann N, Henz SR, Huson DH, Weigel D.

    Proc Natl Acad Sci U S A (2011) 108:10249-10254

    Intracompartmental and intercompartmental transcriptional networks coordinate the expression of genes for organellar functions

    Leister D, Wang X, Haberer G, Mayer KF, Kleine T.

    Plant Physiol (2011) 157:386-404

    Multiple reference genomes and transcriptomes for Arabidopsis thaliana

    Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R.

    Nature (2011) 477:419-423

    Whole-genome sequencing of multiple Arabidopsis thaliana populations

    Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, Schmid KJ, Weigel D.

    Nat Genet (2011) 43:956-963.

  • Workflow of a Computomics project

    Computomics goes above and beyond to deliver unparalleled data analysis services. We work closely with you to identify your research goals, map out a strategy to achieve them, and define your deliverables. Contact us to schedule your initial consultation.

    Initial Consultation

    Experimental Design

    Quotation

    Data Generation

    Final Report & Presentation

    Feedback

    Progress Report

    Analysis

  • Contact

    Tübingen, Germany

    Computomics is based in the university town of Tübingen, situated in the Southwest of Germany, but serves clients all over the world. We also have offices in Davis, California and Madison, Wisconsin.

    This form collects your name, e-mail address and message so that we can get in touch with you about your inquiry. Please see our privacy policy below about how we protect and manage your submitted data.

    Privacy*

    Computomics GmbH
    Christophstr. 32
    72072 Tübingen
    Germany

    Phone: +49 7071 568 3995
    info@computomics.com